Arlindo L. Oliveira

D. Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra C. dos Santos, Tânia R. Cabrito, Alexandre P. Francisco, Sara C. Madeira, R. S. Aires, Arlindo L. Oliveira, Isabel Sá‐Correia, Ana T. Freitas

Nucleic Acids Research journal

2009

The regulatory network underlying the transcriptional up-regulation of the FRL1 gene in mancozeb stressed yeast cells: qualitative modeling and simulation

Pedro T. Monteiro, Paulo Jorge Dias, Delphine Ropers, Arlindo L. Oliveira, Ana T. Freitas, Isabel Sá‐Correia, Miguel C. Teixeira

HAL (Le Centre pour la Communication Scientifique Directe) preprint

Time and Memory Efficient Lempel-Ziv Compression Using Suffix Arrays

Artur Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo

arXiv (Cornell University) preprint

CONSTANT TIME CLASH DETECTION IN PROTEIN FOLDING

Miguel Bugalho, Arlindo L. Oliveira

Journal of Bioinformatics and Computational Biology journal

Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis

Sara C. Madeira, Arlindo L. Oliveira

Lecture notes in computer science book

On the Suitability of Suffix Arrays for Lempel-Ziv Data Compression

Artur Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo

Communications in computer and information science book

On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression

Artur Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo

conference

Haplotype inference with pseudo-Boolean optimization

Ana Graça, João Marques‐Silva, Inês Lynce, Arlindo L. Oliveira

Annals of Operations Research journal

Approximate String Matching with Compressed Indexes

Luís M. S.Russo, Gonzalo Navarro, Arlindo L. Oliveira, Pedro Morales

Algorithms journal

A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series

Sara C. Madeira, Arlindo L. Oliveira

Algorithms for Molecular Biology journal

BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data

Joana P. Gonçalves, Sara C. Madeira, Arlindo L. Oliveira

BMC Research Notes journal

Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm

Sara C. Madeira, Miguel C. Teixeira, Isabel Sá‐Correia, Arlindo L. Oliveira

IEEE/ACM Transactions on Computational Biology and Bioinformatics journal

2008

Cost effectiveness analysis of carotid doppler ultrasound examination in patients with significant left main coronary artery stenosis

Arlindo L. Oliveira, Márcio Sommer Bittencourt, Anthony Pereira, Luı́z Antonio Machado César, Luís Henrique Wolff Gowdak

Circulation journal

USING GRAMMATICAL INFERENCE TECHNIQUES TO LEARN ONTOLOGIES THAT DESCRIBE THE STRUCTURE OF DOMAIN INSTANCES

André L. Martins, H. Sofia Pinto, Arlindo L. Oliveira

Applied Artificial Intelligence journal

Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph

Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas

Lecture notes in computer science book

Generic ILP vs Specialized 0-1 ILP for Haplotype Inference

Ana Graça, Inês Lynce, João Marques‐Silva, Arlindo L. Oliveira

ePrints Soton (University of Southampton) conference

SUFFIX ARRAYS - A Competitive Choice for Fast Lempel-Ziv Compressions

Artur Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo

conference

An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures

Miguel Bugalho, Arlindo L. Oliveira

Lecture notes in computer science book

Haplotype Inference with Boolean Constraint Solving: An Overview

Inês Lynce, Ana Graça, João Marques‐Silva, Arlindo L. Oliveira

conference

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