CONSTANT TIME CLASH DETECTION IN PROTEIN FOLDINGMiguel Bugalho, Arlindo L. OliveiraJournal of Bioinformatics and Computational Biology journal
Haplotype inference with pseudo-Boolean optimizationAna Graça, João Marques‐Silva, Inês Lynce, Arlindo L. OliveiraAnnals of Operations Research journal
Approximate String Matching with Compressed IndexesLuís M. S.Russo, Gonzalo Navarro, Arlindo L. Oliveira, Pedro MoralesAlgorithms journal
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time seriesSara C. Madeira, Arlindo L. OliveiraAlgorithms for Molecular Biology journal
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression dataJoana P. Gonçalves, Sara C. Madeira, Arlindo L. OliveiraBMC Research Notes journal
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering AlgorithmSara C. Madeira, Miguel C. Teixeira, Isabel Sá‐Correia, Arlindo L. OliveiraIEEE/ACM Transactions on Computational Biology and Bioinformatics journal